e. 一、pdist 和 pdist2 是MATLAB中用于计算距离矩阵的两个不同函数，它们的区别在于输入和输出以及一些计算选项。选项：与pdist相比，pdist2可以使用不同的距离度量方式，还可以提供其他选项来自定义距离计算的行为。输出：距离矩阵是一个矩阵，其中每个元素表示第一组点中的一个点与第二组点中的. - GitHub - nolanbconaway/pairdist: A MATLAB function to compute weighted pairwise distances. Is it possible to make these matrix operations without loops in python 2. Rows of X and Y correspond to observations, That is, it works on the ROWS of the matrices. matlab Pdist2 with mahalanobis metric. Categorizing query points based on their distance to points in a training data set can be a simple yet effective way of classifying new points. pdist2 supports various distance metrics: Euclidean distance, standardized Euclidean distance, Mahalanobis distance, city block distance, Minkowski distance, Chebychev distance, cosine distance, correlation distance,. Description. I'm making a set of functions in C for simulate a microcanonial ensamble (a periodic-bounded box with N particles with fixed Energy and Volume). Sir, actually the block[50 X 6] contains 'minutiae' information which contains the following data in columns [X, Y, CN, Theta, Flag, 1]and rows contains number of minutiae information on the dorsalhandvein. The attacks. Fowzi barznji on 16 Mar 2020. You can also use the Image Labeler to train a custom classifier to use with this System object. 45694. I have a matrix A and I compute the dissimilarity matrix using the downloaded function. pdist1 and pdist2 The library can compute distances between pair of observations in one vector using pdist1, and distances between pair of observations in two vectors using pdist2. m. 看看这是否会给你带来与. Interchange between distance matrix and distance vector formats. 'cosine') varies between 0 and 2. pl)Homer contains a useful, all-in-one program for performing peak annotation called annotatePeaks. Adding a "hold on" command means that anything that you plot will not clear the existing graph, but just plot on top of what is already there. 获取定价信息. MY-by-N data matrix Y. Equal rows have distance 0. for i=1:m. If we want to implement this in Eigen, a C++ library for doing linear algebra much in the same manner as in Matlab, we can do it in the following way,so I do that for every point, to find the distance to every other point. However, manually defining the cell array is a limitation here. The builtin function `pdist2` could be helpful, but it is inefficient for multiple timeframes data. distance. 的样本平均值. D = pdist2 ( X,Y, Distance) 中的每一对观测之间的距离。. Copy. You can use the pdist2 MATLAB / Octave function to calculate pairwise distances between two sets of observations. In Matlab, the D = pdist(X, Y) function computes pairwise distances between the two sets of observations X and Y. It shows a path (C:Program FilesMATLAB. Function File: pdist2 (x, y) Function File: pdist2 (x, y, metric) Compute pairwise distance between two sets of vectors. . 可以这样理解 D 的生成：首先生成一个 X 的距离方阵，由于该方阵是对称的，且对角线上的元素为0，所以取此方阵的下三角元素. spatial. I am looking for an alternative to this. D can also be a more general dissimilarity vector or matrix that conforms to the output format of pdist or pdist2, respectively. 78874218621840] Your third party file c:\toolbox\classify\pdist2. Answers (2) The file getIpOptions. Reading and Writing. D = pdist2(X,Y); 用法：设X为一个M行N列的矩阵，Y为一个P行Q列的矩阵，则函数的返回值D为一个M行P列的矩阵。 pdist2计算X中任意一个行向量与Y中任意一个行向量的距离，默认采用欧氏距离公式。dist = pdist2(d,centroids,distance); % distance between all data points and centroids I'd like to mention that I used matlab in system with windows 8 and following configuration :中的每个点减去. You can specify DistParameter only when Distance is 'seuclidean', 'minkowski', or. I'm sorry, you are correct. Online and cloud offerings such as MATLAB Online, MATLAB Drive, and MATLAB Mobile. The main idea is to eliminate image pixes that are far away from the circumference before computing pdist2. A “good” model should have largepdist2 in numpy? (compute pairwise distance between rows in two matrices) 0. caseread. This is what I have so far:The euclidean distance between the reference vector and all the elements in the pixel location vector is computed using the MATLAB function "pdist2" and the result is applied to some conditions; however, upon running the code, this function seems to be taking the longest to compute (i. I would like to use the command pdist2 in order to compute distance between two geographical coordinates. example. I also know that pdist2 can help reduce the time for calculation but since I am using version 7. Regards, Bhavya PDIST2 Pairwise distance between two sets of observations. 93847 0. In human motion analysis, a commond need is the computation of the distance between defferent point sets. , is a vector of length ), (2,3),. Security purpose: Face recognition is turning out to be the most common method to maintain the security of the individual/organization. 166666666666667. . fullFileName = fullfile (myfolder, baseFileName); %loads the data for the file that I want to compare to baseline neutralRMS. In case it's not faster, it's at least a lot easier to understand. Pair distribution functions were calculated using Matlab’s ‘pdist2’. 1 Answer. I was told that by removing unnecessary for loops I can reduce the execution time. Accepted Answer. m. The builtin function `pdist2` could be helpful, but it is inefficient for multiple timeframes data. % Autor: Ana C. Ask Question Asked 8 years, 5 months ago. example. D = pdist2(___,Name,Value)使用名称-值对参数之一指定附加选项。'Smallest'或'Largest'除了以前语法中的任何参数之外。 例如, D = pdist2(X,Y,Distance,'Smallest',K)指定的度量计算距离。Distance并返回K与观测的最小成对距离X中的每一次观察Y按升序排列。 This is a very interesting suggestion and comparison. Create a matrix with three observations and two variables. . example. 的样本平均值. between each pair of observations in the MX-by-N data matrix X and. Q&A for work. Currently avaliable codes in FEX are also insufficient as they can only compute (squared. Note that the. Use pdist2 to find the distance between a set of data and query points. w (N,) array_like, optional. An m A by n array of m A original observations in an n -dimensional space. comparison of two histograms using pdist2. Rows of X and Y correspond to observations, That is, it works on the ROWS of the matrices. 您可以指定 DistParameter 只有当 Distance 是 'seuclidean', 'minkowski' ，或 'mahalanobis'. If observation i in X or observation j in Y contains NaN values, the function pdist2 returns NaN for the pairwise distance between i and j. For the nearest neighbor distance, the smallest pairwise distance value was chosen for each data point. e. tic; d2 = pdist2 (p1,pn); t2 (p) = toc; end. 判别分析时，通常涉及到计算两个样本之间的距离，多元统计学理论中有多种距离计算公式。MATLAB中已有对应函数，可方便直接调用计算。距离函数有：pdist, pdist2, mahal, squareform, mdscale, cmdscale 主要介绍pdist2 ,其它可参考matlab help D = pdist2(X,Y)D = pdist2(X,Y,distance)D = pdist. xy = rand (5, 2); distances = pdist2 (xy, xy) S = sum (distances) This code will give all sum of distances between the points, now the point having minimum distance. For example, you can find the distance between observations 2 and 3. evaluate ('v * exp (-g * (A + B - 2 * C))', { 'A' : X_norm [:,None], 'B' : X_norm [None. The double-loop above has O(N²) complexity. which -all pdist will list all the pdist MATLAB files in your MATLAB path. pdist2 computes the distances between observations in two matrices and also returns a distance matrix. In the case of a symmetric matrix this means that all eigenvalues must be positive. rema on 16 Feb 2023. The. pdist2 Pairwise distance between two sets of observations. Warning: Converting non-floating point data to single. It computes the distances between rows of X. Sign in to answer this question. But pdist2 might have a lot of. ,an｝，将它们按大小顺序排列，取中间的那个值作为滤波器的输出。 @Lukas Gaßmann Start your own question with your EEG data attached in a . D = pdist2 (X,Y,Distance) returns the distance between each pair of observations in X and Y using the metric specified by Distance. m. m","path":"FastMICE_ConsensusFunction. MY-by-N data matrix Y. distfun must. pdist (Statistics Toolbox) Y = pdist (X,' Y = pdist (X,distfun,p1,p2,. In order to visualize the final result just add to Gunther's code the following lines: row=data (:,1); col=data (:,2); figure scatter (row,col,'r'); hold on line (row (result),col (result)); The following code shows the same algorithm but for a 3D. 欧氏距离： 也可以用表示成向量运算的形式： (4)Matlab计算欧氏距离 Matlab计算距离主要使用pdist函数。若X是一个M×N的矩阵，则pdist(X)将X矩阵M行的每一. Copy. But pdist2 might have a lot of overhead. D = pdist2 (X,Y,Distance,DistParameter) returns the distance using the metric specified by Distance and DistParameter. % ZJ is an m2-by-n matrix containing multiple observations. A pixel is an element of a matrix that represents something (like reflectance) of a certain scene. 0. pdist_oneLine. pdist2 calculates the distances between observations in two vectors with one of the following methods: manhattan: The L1 distance between two vectors P and Q is defined. md","path":"README. 使用四个预处理器指令来控制条件编译：. D = pdist2 ( X,Y, Distance, DistParameter) 指定的度量返回距离。. CanberraSimilarity. Copy. MY-by-N data matrix Y. Show -1 older comments Hide -1 older comments. D = pdist2 (X,Y) returns a matrix D containing the Euclidean distances. cholesky (a) [source] # Cholesky decomposition. Annotating Regions in the Genome (annotatePeaks. Inputs are converted to float type. Based on your location, we recommend that you select: . 49140 0. between each pair of observations in the MX-by-N data matrix X and. Add a comment. remoteBlockExecutionPlain (line 49) In spmdlang. Copy. Copy. index = 1:size (points, 1); In some places you use length (points). For code generation, define an entry-point function that accepts the cluster centroid positions and the new data. Si 'maximal', pdist2 intenta asignar suficiente memoria para una matriz intermedia entera cuyo tamaño es MX por MY, donde MX es el número de filas de los datos de entrada X y MY es el número de filas de los datos de entrada Y. Parameters: XAarray_like. D = pdist2 (___, Name,Value) 使用. Pass Z to the squareform function to reproduce the output of the pdist function. . Hello StackOverflow community, I'm having a hard time wrapping my head around a problem I'm having in MATLAB. 0. Distance 和 DistParameter 。. This way, you offload the bother of vectorization to the people who wrote MATLAB/Octave (and they have done a pretty good job of it) X = rand (10,3); Y = rand (5,3); D = pdist2 (X, Y); D is now a 10x5 matrix where the i, j th. You can use the pdist2 MATLAB / Octave function to calculate pairwise distances between two sets of observations. pdist2 Pairwise distance between two sets of observations. It will take the distance between the two sets at the beginning. I also know that pdist2 can help reduce the time for calculation but since I am using version 7. minDistance = 0. These are the top rated real world Python examples of utils. 1. Learn more about matrix manipulation, distance, pdist2, matlab function, indexing, matrix, arrays MATLAB I was wondering if there is a built in matlab fucntion that calculates the distance between two arrays that don't have the. 获得无限制的在线版访问权限。. I don't think it is any faster computing that with hand-written MATLAB code. NaN NaN NaN NaN 1 2 2 NaN 3 1. hold on. > In pdist2 (line 253) In ExhaustiveSearcher/knnsearch (line 235) In knnsearch (line 154) In internal. b = load (fullFileName); %puts it into an array, size varies as the loop runs through the 32 files!!! FileRMSdata = b. There will only be one smallest distance. Compute the Cosine distance between 1-D arrays. Sign in to your MathWorks Account or create a new one. For code generation, define an. When working with a large number of. Goncalves. . Ultimately, the idea is that all the sparse. D = pdist2 (X,Y,@CalcDist) function D2=CalcDist (ZI,ZJ) % calculation of distance. pdist2: Compute pairwise distance between two sets of vectors. 4 Descriptive measures of linear association between X and Y It follows from SST = SSR+SSE that 1= SSR SST + SSE SST where • SSR SST is the proportion of Total sum of squares that can be explained/predicted by the predictor X • SSE SST is the proportion of Total sum of squares that caused by the random effect. Theme. calculate_distance. end. D = pdist2 (X,Y,Distance,DistParameter) returns the distance using the metric specified by Distance and DistParameter. Share. The matrix I contains the indices of the observations in X corresponding to the distances in D. I'm having some trouble in calculating the Mahalanobis Distance between a pair of objects. I need to build a for loop to calculate the pdist2 between the first row of A and all the rows of B, the second row of A. , is a vector of length ), (2,3),. 0. Improve this answer. 4. Every time I want to use pdist2, I get the following error: Undefined function 'pdist2mex' for input arguments of type 'double'. Every time I want to use pdist2, I get the following error: Undefined function 'pdist2mex' for input arguments of type 'double'. MATLAB's custom distance function example. I'd recommend you always use size (points, 1) as length would return the number of columns if for some reason you only had 1 or 2 points. TagsIt should be as simple as using two nested for loops but I can't get anything to make sense of it. D = PDIST2(X,Y) returns a matrix D containing the Euclidean distances between each pair of observations in the MX-by-N data matrix X and MY-by-N data matrix Y. Pass Z to the squareform function to reproduce the output of the pdist function. I hope that is a little clearer. stats. Based on your location, we recommend that you select: . Rows of X and Y correspond to observations, That is, it works on the ROWS of the matrices. Evaluating the squared term of a gaussian kernel for having a covariance matrix for multi-dimensional inputs. i. pydist2 is a python library that provides a set of methods for calculating distances between observations. If you didn't then the result in in pixels and you'll have to multiply those distances by the spatial calibration factor. Later on, after some calculations with the newly transformed matrix, I need to convert it back to the original size in order to display the image. The code should (hopefully) be easily readable since it has been well commented, with report for background. Now I want to create a mxn matrix such that (i,j) element represents the distance from ith point of mx2 matrix to jth point of nx2 matrix. This function can do both - it will function like pdist if only one set of observations is provided and will function like pdist2 if two. Rows of X and Y correspond to observations, That is, it works on the ROWS of the matrices. The builtin function `pdist2` could be helpful, but it is inefficient for multiple timeframes data. Ignore that code (I'll delete it) and use this instead: timeStamps = rand (numPoints1, 1) % Sample data. m is interfering with use of the pdist2 from the Statistics toolbox. Turner, Don Thompson. end. is there an alternative to pdist2 that calculates the distance between a matrices with different column numbers. 0. 9448. % space. E=pdist2（X，Y-mean（X），'mahalanobis'，S）. . Improve this answer. {"payload":{"allShortcutsEnabled":false,"fileTree":{"classify":{"items":[{"name":"private","path":"classify/private","contentType":"directory"},{"name":"Contents. You will use the clustergram function to perform hierarchical clustering and generate a heat map and dendrogram of the data. % Learning toolbox. 1 − u ⋅ v ‖ u ‖ 2 ‖ v ‖ 2. It will not be the longest perpendicular distance along the centerline. distance import pdist, squareform # my list of strings strings = ["hello","hallo","choco"] # prepare 2 dimensional array M x N (M entries (3) with N. D = pdist2 (X,Y,@CalcDist) function D2=CalcDist (ZI,ZJ) % calculation of distance. e. 8197976955836 . Not efficient, but a fun alternative :) – Divakar. pdist2 function. I simply call the command pdist2(M,N). I'm trying to use the pdist2 function and keep getting this error: "??? Undefined function or method 'pdist2' for input arguments of type 'double'" The 'double' part changes depending on what data. Use. It's hard to tell without knowing what dtw2 is. spatial. If you. cosine. % Isolate data that are within a square around the circle. See Also. Upgrade is not an option. 2种计算方式，一种直接利用pdist计算，另一种. Therearetwo. squareform returns a symmetric matrix where Z (i,j) corresponds to the pairwise distance between observations i and j. m. Z (2,3) ans = 0. . Nov 8, 2013 at 9:26. function Distance = euclidean (x,y) % This function replaces the function pdist2 available only at the Machine. mahal() function. MY-by-N data matrix Y. Currently avaliable codes in FEX are also insufficient as they can only compute (squared. pydist2 is a python library that provides a set of methods for calculating distances between observations. 相同的结果，我想有两种不同的方法来计算两组数据之间的马氏距离，就像你上面解释的那样： 1） 将样本集中的每个数据点与. How does condensed distance matrix work? (pdist) scipy. I mean a 1-to-1 mapping of points. d(u, v) = max i | ui − vi |. Use cellfun in combination with strfind and isempty or isequal directly. ') %//' %// Use DIFF to get a logical array of repetitions and %// use. casewrite. The Hamming distance between two vectors is the percentage of the vector components that differ. I make a calcul between each point : Distance = pdist2 (X,X); But sometimes I have a problem of memory. Sign in to answer this question. Compute the Euclidean distance between pairs of observations, and convert the distance vector to a matrix using squareform. If you want to order the points from B by their distance to the r th point in A then you can sort the r th row of the pairwise distance matrix. This norm is also. D = pdist2 (X,Y,Distance,DistParameter) returns the distance using the metric specified by Distance and DistParameter. Learn more about distance, matched points, error, pdist2, distance between points Hello, I have two sets of matched points (matchedPoints1 and matchedPoints2, the size is 142x1 and the type is SURFPoints) and I want to. . There are two main classes: pdist1 which calculates the pairwise distances. If you are getting the matrices as an output from some code, I strongly recommend you directly store them. Sign in to comment. 3 Comments. Rows of X and Y correspond to observations, That is, it works on the ROWS of the matrices. It computes the distances between rows of X. To save memory on the device, you can separate training and prediction by using kmeans and pdist2, respectively. 52181708330649 5. If a is m x r and b is n x r then. Learn more about histogram comparison, image comparison, image segmentation, distance comparison, chi-square Image Processing Toolbox hi, I am having two Images I wanted compare these two Images by histograms I have read about pdist that provides 'chisq' but i think the way i am doing. 可以这样理解 D 的生成：首先生成一个 X 的距离方阵，由于该方阵是对称的，令对角线上的元素为0，所以取此方阵的下. numpy. pl can perform Gene Ontology Analysis, genomic feature association analysis (Genome Ontology), associate peaks with gene expression. [W,K] = pdist2(IJ,IJ, 'chebychev', 'Smallest',9); From here, columns of W containing only 1 can be selected and can be matched with columns of K to get the adjacency matrix. m. % accept a matrix ZJ with an arbitrary number of observations. mahal. % ZJ is an m2-by-n matrix containing multiple observations. SVM will also do that. Sorted by: 4. @Image Analyst Hello, I tried to find the minimum distance bewteen two objects as per the code you provided on a similar post- 'test3. slicesample: Draws NSAMPLES samples from a target stationary distribution PDF using slice sampling of Radford M. % accept a matrix. The bwdist () compute the distance transform of all points. 9448. You can specify DistParameter only when Distance is 'seuclidean', 'minkowski', or. pdist2. Sorry - that's what I get for tossing something off the top of my head and not actually testing it. def test (trainY, testY, traingnd, testgnd, radius=2): # make sure trangnd and testgnd are flattened testgnd = testgnd. Show us your code so we can confirm it. . Rows of X and Y correspond to observations, and columns correspond to variables. Maybe the differences are due to the incorrect use of the indexes i and j. m file or add it as a file on the MATLAB® path. 0. ^2) K_sigmoid = tanh (gamma*X*Y' + b); X and Y are matrices where the rows are the data points (vectors). If pdist2 is only fast because it's compiled, then your probably best served by just using it and then squaring the result, since squaring a large number of values is something Matlab does pretty efficiently anyway. This norm is also. What I mean is, the way the distance between the two bones in one image was found, I need to find the distance between the two bones for all these images(420 images). pydist2 is a python library that provides a set of methods for calculating distances between observations. knnsearch finds euclidean distance by default. Learn more about TeamsAccepted Answer: Star Strider. pdist2 Pairwise distance between two sets of observations. n = norm (v) returns the 2 -norm of symbolic vector v. Learn more about euclidean, minimum distance, pdist, pdist2, distance, minimum Hi, I am trying to make a function to find minimum distance between my random points and a point (0,0) and plot the distance as a line crossing from the (0,0) to the one of the closest rand pt. m. pdist2 calculates the distances between points in two vectors and returns a vector which. When working with a large number of. Given a matrix A of size [N,3] and a matrix B of size [M,3], you can use the pdist2 function to get a matrix of size [M,N] containing all the pairwise distances. pdist2 Pairwise distance between two sets of observations. example. figure. More precisely, the distance is given by. which -all pdist2. From the documentation: Returns a condensed distance matrix Y. 7. CHAPTER ONE PYDIST2 pydist2isapythonlibrarythatprovidesasetofmethodsforcalculatingdistancesbetweenobservations. % n = norm (v) returns the Euclidean norm of vector v. Accepted Answer . It seems that the pdist2 version lacks in efficiency due mainly to the element-wise squares, while Matlab now provides the 'squaredeuclidean' option to get this directly. computes the Euclidean distance between pairs of objects in . Now you have the intersection to the ocean: Calculate the distance. You can specify DistParameter only when Distance is 'seuclidean', 'minkowski', or. Set the minimum Euclidean distance between clusters. Instead, I am able to find the distance from the boundary of the image to one of the objects. Which is "Has no license available". I'll generate some random data to serve as example, which will result in low (around chance level) accuracy. squareform returns a symmetric matrix where Z (i,j) corresponds to the pairwise distance between observations i and j. example. between each pair of observations in the MX-by-N data matrix X and. pdist supports various distance metrics: Euclidean distance, standardized Euclidean distance, Mahalanobis distance, city block distance, Minkowski distance, Chebychev distance, cosine distance, correlation distance, Hamming distance, Jaccard distance, and Spearman. Given X = randu(3, 2), Y = randu(3, 2), where each row stores an observation (x, y). 0. The matrix must be positive definite which is not the same as having positive entries. Default is None, which gives each value a weight of 1. In the case of a symmetric matrix this means that all eigenvalues must be positive. pydist2 is a python library that provides a set of methods for calculating distances between observations. end. 0 Comments. pdist2 computes the distances between observations in two matrices and also returns a distance matrix. Find more on Graphics Object Programming in Help Center and File Exchange. between each pair of observations in the MX-by-N data matrix X and. Let X be an MxP matrix representing m points in P-dimensional space and Y be an NxP matrix representing another set of points in the same space. What i want to do is to write a code, that does not involve loops and pdist2, as fast as possible, that tells me the indices of the row of both A and B such that the distance. out = 1×10. . Thus if you input a matrix with N points and one with M points, you get N*M distances. I followed the documentation of MATLAB where in order to calculate Mahalanobis Distance, I have to use pdist2: "D = pdist2 (X,Y,'mahalanobis',C)" A1= [75 87 90]; A2= [99 88 100]; C = nancov. Different behaviour for pdist and pdist2. Theme. mat file and we'll show you how you can use pdist2() to find close points. ) Y = pdist (X,'. m should be stored in the directory identified below. for k = 1:length (BLOCK) plot (TIME (k),BLOCK (k)) if k == 1. Categories MATLAB Graphics Graphics Objects Graphics Object Programming. 4 Answers. Fowzi barznji on 16 Mar 2020. Nowadays you are probably better of using Matlabs fast compiled version, pdist2; which is about 200% faster when the number of vectors are large. I use matlab to calculate the distance transform of a binary image, and I found that bwdist () can calculate distances of all the points of the image, but I just want to know the distance of a special point. Sign in to answer this question. pydist2 is a python library that provides a set of methods for calculating distances between observations. image = 1 0 0 0 0 1 0 0 0. tic; d2 = pdist2 (p1,pn); t2 (p) = toc; end. Let's say that the pixel to pixel spacing is 64 microns, and you want the distance between the 34th blob and the 78th blob. distfun must return an m2-by-1 vector of distances d2, whose kth element is the distance between XI. 相同的结果，我想有两种不同的方法来计算两组数据之间的马氏距离，就像你上面解释的那样： 1） 将样本集中的每个数据点与. Email. Share. Would you help correcting my. for one run, the function was called upon 27,245 times. % ZI is a 1-by-n vector containing a single observation. This function can do both - it will function like pdist if only one set of observations is provided and will function like pdist2 if two. The Chebyshev distance between two n-vectors u and v is the maximum norm-1 distance between their respective elements. kmeans를 사용하여 MATLAB®에서 군집을 생성하고 생성된 코드에서 pdist2를 사용하여 기존 군집에 새 데이터를 할당합니다. Copy. Specify the initial values of the kernel parameters (Because you use a custom kernel function, you must provide initial values. 代わりにpdist2という関数があります。 こちらは、2つのベクトルの距離を計算しますが、プロパティで距離のタイプを選ぶことができてその中にマハラノビス距離があります。scipy. pdist and pdist2 can calculate the city block distance. You can use pdist2 to compute pairwise distance between two sets of observations as follows: X = randn (200, 2); Y = randn (3, 2); D = pdist2 (X,Y,'euclidean'); % euclidean distance. Say a gaussian process regression take with predictor X in 2D, i. D can be the output of pdist or pdist2, or a more general dissimilarity vector or matrix conforming to the output format of pdist or pdist2, respectively. For further examples and tests, run. Matlab-pdist2函数用法. Runtime: less than a minute. Use kmeans to create clusters in MATLAB® and use pdist2 in the generated code to assign new data to existing clusters. Upgrade is not an option.